3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUGGGGCGG
Length
9 nucleotides
Bulged bases
6OF6|1|RA|G|2250
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OF6_095 not in the Motif Atlas
Homologous match to HL_4WF9_049
Geometric discrepancy: 0.1239
The information below is about HL_4WF9_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_85367.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

6OF6|1|RA|C|2248
6OF6|1|RA|U|2249
6OF6|1|RA|G|2250
6OF6|1|RA|G|2251
6OF6|1|RA|G|2252
6OF6|1|RA|G|2253
6OF6|1|RA|C|2254
6OF6|1|RA|G|2255
6OF6|1|RA|G|2256

Current chains

Chain RA
23S rRNA

Nearby chains

Chain QV
Transfer RNA; tRNA
Chain R0
50S ribosomal protein L27
Chain RQ
50S ribosomal protein L16

Coloring options:


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