HL_6OFX_012

3D structure

PDB id

6OFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6OFX|1|1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OFX_012 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.1122

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6OFX|1|1|G|410
6OFX|1|1|G|411
6OFX|1|1|A|412
6OFX|1|1|C|413
6OFX|1|1|C|414
6OFX|1|1|A|415
6OFX|1|1|U|416
6OFX|1|1|C|417

Current chains

Chain 1

23S ribosomal RNA

Nearby chains