3D structure

PDB id
6OG7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGUAACAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OG7_020 not in the Motif Atlas
Homologous match to HL_5J7L_154
Geometric discrepancy: 0.2304
The information below is about HL_5J7L_154
Detailed Annotation
GNRA wlth tandem sheared
Broad Annotation
No text annotation
Motif group
HL_81538.2
Basepair signature
cWW-tSH-F-F-F-F
Number of instances in this motif group
16

Unit IDs

6OG7|1|1|G|712
6OG7|1|1|G|713
6OG7|1|1|U|714
6OG7|1|1|A|715
6OG7|1|1|A|716
6OG7|1|1|C|717
6OG7|1|1|A|718
6OG7|1|1|C|719

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 3
Small subunit ribosomal RNA; SSU rRNA
Chain T
30S ribosomal protein S15

Coloring options:


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