HL_6OG7_025

3D structure

PDB id

6OG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

6OG7|1|1|U|958, 6OG7|1|1|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OG7_025 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.1186

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6OG7|1|1|U|955
6OG7|1|1|G|956
6OG7|1|1|C|957
6OG7|1|1|U|958
6OG7|1|1|A|959
6OG7|1|1|A|960
6OG7|1|1|C|961
6OG7|1|1|G|962

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

5S ribosomal RNA; 5S rRNA

Chain m

50S ribosomal protein L16