HL_6OGF_012

3D structure

PDB id

6OGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6OGF|1|1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGF_012 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.1341

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6OGF|1|1|G|410
6OGF|1|1|G|411
6OGF|1|1|A|412
6OGF|1|1|C|413
6OGF|1|1|C|414
6OGF|1|1|A|415
6OGF|1|1|U|416
6OGF|1|1|C|417

Current chains

Chain 1

23S ribosomal RNA

Nearby chains