HL_6OGF_024

3D structure

PDB id

6OGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUCAUCCCGAC

Length

11 nucleotides

Bulged bases

6OGF|1|1|C|888, 6OGF|1|1|C|889, 6OGF|1|1|G|891

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGF_024 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3517

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6OGF|1|1|G|883
6OGF|1|1|U|884
6OGF|1|1|C|885
6OGF|1|1|A|886
6OGF|1|1|U|887
6OGF|1|1|C|888
6OGF|1|1|C|889
6OGF|1|1|C|890
6OGF|1|1|G|891
6OGF|1|1|A|892
6OGF|1|1|C|893

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain X

30S ribosomal protein S19

Chain e

50S ribosomal protein L5