HL_6OGF_100

3D structure

PDB id

6OGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6OGF|1|3|U|1451, 6OGF|1|3|C|1452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGF_100 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.23

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

6OGF|1|3|C|1449
6OGF|1|3|U|1450
6OGF|1|3|U|1451
6OGF|1|3|C|1452
6OGF|1|3|G|1453
6OGF|1|3|G|1454

Current chains

Chain 3

16S ribosomal RNA

Nearby chains