3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UGAGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OJ2_007 not in the Motif Atlas
Homologous match to HL_4LFB_007
Geometric discrepancy: 0.0803
The information below is about HL_4LFB_007
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

6OJ2|1|QA|U|296
6OJ2|1|QA|G|297
6OJ2|1|QA|A|298
6OJ2|1|QA|G|299
6OJ2|1|QA|A|300
6OJ2|1|QA|G|301

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QD
30S ribosomal protein S4
Chain QE
30S ribosomal protein S5
Chain QH
30S ribosomal protein S8
Chain QQ
30S ribosomal protein S17

Coloring options:


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