HL_6OJ2_008

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OJ2_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0625

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6OJ2|1|QA|C|320
6OJ2|1|QA|A|321
6OJ2|1|QA|C|322
6OJ2|1|QA|U|323
6OJ2|1|QA|G|324
6OJ2|1|QA|A|325
6OJ2|1|QA|G|326
6OJ2|1|QA|A|327
6OJ2|1|QA|C|328
6OJ2|1|QA|A|329
6OJ2|1|QA|C|330
6OJ2|1|QA|G|331
6OJ2|1|QA|G|332
6OJ2|1|QA|G|333

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16

Chain QT

30S ribosomal protein S20