HL_6OJ2_036

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UCAGAAGGGAGA

Length

12 nucleotides

Bulged bases

6OJ2|1|QW|A|17, 6OJ2|1|QW|G|18, 6OJ2|1|QW|G|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OJ2_036 not in the Motif Atlas

Homologous match to HL_4V7M_038

Geometric discrepancy: 0.5779

The information below is about HL_4V7M_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23010.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

6OJ2|1|QW|U|12
6OJ2|1|QW|C|13
6OJ2|1|QW|A|14
6OJ2|1|QW|G|15
6OJ2|1|QW|A|16
6OJ2|1|QW|A|17
6OJ2|1|QW|G|18
6OJ2|1|QW|G|19
6OJ2|1|QW|G|20
6OJ2|1|QW|A|21
6OJ2|1|QW|G|22
6OJ2|1|QW|A|23

Current chains

Chain QW

E-site tRNAAla(GGC)

Nearby chains

Chain RA

Large subunit ribosomal RNA; LSU rRNA