3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UCAGAAGGGAGA
Length
12 nucleotides
Bulged bases
6OJ2|1|QW|A|17, 6OJ2|1|QW|G|18, 6OJ2|1|QW|G|19
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OJ2_036 not in the Motif Atlas
Homologous match to HL_4V7M_038
Geometric discrepancy: 0.5779
The information below is about HL_4V7M_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_23010.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
1

Unit IDs

6OJ2|1|QW|U|12
6OJ2|1|QW|C|13
6OJ2|1|QW|A|14
6OJ2|1|QW|G|15
6OJ2|1|QW|A|16
6OJ2|1|QW|A|17
6OJ2|1|QW|G|18
6OJ2|1|QW|G|19
6OJ2|1|QW|G|20
6OJ2|1|QW|A|21
6OJ2|1|QW|G|22
6OJ2|1|QW|A|23

Current chains

Chain QW
E-site tRNAAla(GGC)

Nearby chains

Chain RA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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