3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GUUCGAUCC
Length
9 nucleotides
Bulged bases
6OJ2|1|QY|U|59
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OJ2_040 not in the Motif Atlas
Homologous match to HL_4WSM_211
Geometric discrepancy: 0.5388
The information below is about HL_4WSM_211
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.8
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
140

Unit IDs

6OJ2|1|QY|G|53
6OJ2|1|QY|U|54
6OJ2|1|QY|U|55
6OJ2|1|QY|C|56
6OJ2|1|QY|G|57
6OJ2|1|QY|A|58
6OJ2|1|QY|U|59
6OJ2|1|QY|C|60
6OJ2|1|QY|C|61

Current chains

Chain QY
A-site tRNAAla(GGC)

Nearby chains

Chain RA
Large subunit ribosomal RNA; LSU rRNA
Chain RQ
50S ribosomal protein L16
Chain RZ
50S ribosomal protein L25

Coloring options:


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