HL_6OJ2_040

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUUCGAUCC

Length

9 nucleotides

Bulged bases

6OJ2|1|QY|U|59

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OJ2_040 not in the Motif Atlas

Homologous match to HL_4WSM_211

Geometric discrepancy: 0.5388

The information below is about HL_4WSM_211

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

6OJ2|1|QY|G|53
6OJ2|1|QY|U|54
6OJ2|1|QY|U|55
6OJ2|1|QY|C|56
6OJ2|1|QY|G|57
6OJ2|1|QY|A|58
6OJ2|1|QY|U|59
6OJ2|1|QY|C|60
6OJ2|1|QY|C|61

Current chains

Chain QY

A-site tRNAAla(GGC)

Nearby chains

Chain RA

Large subunit ribosomal RNA; LSU rRNA

Chain RQ

50S ribosomal protein L16

Chain RZ

50S ribosomal protein L25