HL_6OJ2_040
3D structure
- PDB id
- 6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUCGAUCC
- Length
- 9 nucleotides
- Bulged bases
- 6OJ2|1|QY|U|59
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OJ2_040 not in the Motif Atlas
- Homologous match to HL_4WSM_211
- Geometric discrepancy: 0.5388
- The information below is about HL_4WSM_211
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
6OJ2|1|QY|G|53
6OJ2|1|QY|U|54
6OJ2|1|QY|U|55
6OJ2|1|QY|C|56
6OJ2|1|QY|G|57
6OJ2|1|QY|A|58
6OJ2|1|QY|U|59
6OJ2|1|QY|C|60
6OJ2|1|QY|C|61
Current chains
- Chain QY
- A-site tRNAAla(GGC)
Nearby chains
- Chain RA
- Large subunit ribosomal RNA; LSU rRNA
- Chain RQ
- 50S ribosomal protein L16
- Chain RZ
- 50S ribosomal protein L25
Coloring options: