3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GUUCGUGGAGC
Length
11 nucleotides
Bulged bases
6OJ2|1|RA|G|386
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OJ2_053 not in the Motif Atlas
Homologous match to HL_7RQB_013
Geometric discrepancy: 0.1049
The information below is about HL_7RQB_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_91503.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6OJ2|1|RA|G|382
6OJ2|1|RA|U|383
6OJ2|1|RA|U|384
6OJ2|1|RA|C|385
6OJ2|1|RA|G|386
6OJ2|1|RA|U|387
6OJ2|1|RA|G|388
6OJ2|1|RA|G|389
6OJ2|1|RA|A|390
6OJ2|1|RA|G|391
6OJ2|1|RA|C|392

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R1
50S ribosomal protein L28
Chain RP
50S ribosomal protein L15

Coloring options:


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