3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUUAGAAGCAG
Length
11 nucleotides
Bulged bases
6OJ2|1|RA|A|1070
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OJ2_069 not in the Motif Atlas
Homologous match to HL_5J7L_161
Geometric discrepancy: 0.4874
The information below is about HL_5J7L_161
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_19210.3
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

6OJ2|1|RA|C|1064
6OJ2|1|RA|U|1065
6OJ2|1|RA|U|1066
6OJ2|1|RA|A|1067
6OJ2|1|RA|G|1068
6OJ2|1|RA|A|1069
6OJ2|1|RA|A|1070
6OJ2|1|RA|G|1071
6OJ2|1|RA|C|1072
6OJ2|1|RA|A|1073
6OJ2|1|RA|G|1074

Current chains

Chain RA
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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