HL_6OJ2_081

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6OJ2|1|RA|A|1614, 6OJ2|1|RA|A|1616, 6OJ2|1|RA|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OJ2_081 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0961

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6OJ2|1|RA|C|1612
6OJ2|1|RA|G|1613
6OJ2|1|RA|A|1614
6OJ2|1|RA|C|1615
6OJ2|1|RA|A|1616
6OJ2|1|RA|C|1617
6OJ2|1|RA|A|1618
6OJ2|1|RA|G|1619

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RW

50S ribosomal protein L22