3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
6OJ2|1|XA|U|421
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OJ2_123 not in the Motif Atlas
Homologous match to HL_6CZR_082
Geometric discrepancy: 0.238
The information below is about HL_6CZR_082
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50006.1
Basepair signature
cWW-F-F
Number of instances in this motif group
6

Unit IDs

6OJ2|1|XA|C|419
6OJ2|1|XA|U|420
6OJ2|1|XA|U|421
6OJ2|1|XA|C|422
6OJ2|1|XA|G|423
6OJ2|1|XA|G|424

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XC
30S ribosomal protein S3
Chain XD
30S ribosomal protein S4

Coloring options:


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