HL_6OJ2_138

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

6OJ2|1|XA|U|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OJ2_138 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.3535

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

6OJ2|1|XA|G|1134
6OJ2|1|XA|U|1135
6OJ2|1|XA|U|1136
6OJ2|1|XA|C|1137
6OJ2|1|XA|G|1138
6OJ2|1|XA|G|1139
6OJ2|1|XA|C|1140

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XI

30S ribosomal protein S9