HL_6OJ2_155

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

6OJ2|1|YA|G|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OJ2_155 not in the Motif Atlas

Homologous match to HL_4WF9_003

Geometric discrepancy: 0.0876

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6OJ2|1|YA|G|123
6OJ2|1|YA|G|124
6OJ2|1|YA|G|125
6OJ2|1|YA|A|126
6OJ2|1|YA|A|127
6OJ2|1|YA|C|128

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y7

50S ribosomal protein L34

Chain YX

50S ribosomal protein L23