HL_6OJ2_158

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6OJ2|1|YA|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OJ2_158 not in the Motif Atlas

Homologous match to HL_5J7L_139

Geometric discrepancy: 0.1068

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6OJ2|1|YA|G|194
6OJ2|1|YA|A|195
6OJ2|1|YA|A|196
6OJ2|1|YA|A|197
6OJ2|1|YA|C|198
6OJ2|1|YA|A|199
6OJ2|1|YA|U|200
6OJ2|1|YA|C|201

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain YP

50S ribosomal protein L15