HL_6OJ2_182

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

6OJ2|1|YA|A|1095, 6OJ2|1|YA|A|1096

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OJ2_182 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.3618

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

6OJ2|1|YA|C|1092
6OJ2|1|YA|G|1093
6OJ2|1|YA|U|1094
6OJ2|1|YA|A|1095
6OJ2|1|YA|A|1096
6OJ2|1|YA|U|1097
6OJ2|1|YA|A|1098
6OJ2|1|YA|G|1099

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y9

50S ribosomal protein L36

Chain YH

50S ribosomal protein L6