HL_6OJ2_211

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OJ2_211 not in the Motif Atlas

Homologous match to HL_4WF9_054

Geometric discrepancy: 0.1017

The information below is about HL_4WF9_054

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6OJ2|1|YA|C|2374
6OJ2|1|YA|G|2375
6OJ2|1|YA|A|2376
6OJ2|1|YA|A|2377
6OJ2|1|YA|A|2378
6OJ2|1|YA|G|2379

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y6

50S ribosomal protein L33

Chain YS

50S ribosomal protein L18