HL_6OJ2_221

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

6OJ2|1|YA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OJ2_221 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.0853

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6OJ2|1|YA|G|2819
6OJ2|1|YA|A|2820
6OJ2|1|YA|A|2821
6OJ2|1|YA|G|2822
6OJ2|1|YA|A|2823
6OJ2|1|YA|C|2824
6OJ2|1|YA|C|2825
6OJ2|1|YA|A|2826
6OJ2|1|YA|C|2827

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L3

Chain YR

50S ribosomal protein L17