HL_6OKK_002

3D structure

PDB id

6OKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAAAGC

Length

7 nucleotides

Bulged bases

6OKK|1|A|G|157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OKK_002 not in the Motif Atlas

Geometric match to HL_7RQB_047

Geometric discrepancy: 0.2421

The information below is about HL_7RQB_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6OKK|1|A|G|152
6OKK|1|A|A|153
6OKK|1|A|A|154
6OKK|1|A|A|155
6OKK|1|A|A|156
6OKK|1|A|G|157
6OKK|1|A|C|158

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S6

Chain a

40S ribosomal protein S24