HL_6OKK_036

3D structure

PDB id

6OKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCGGGUCUCAUAAU

Length

14 nucleotides

Bulged bases

6OKK|1|g|U|32

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OKK|1|g|G|27
6OKK|1|g|C|28
6OKK|1|g|G|29
6OKK|1|g|G|30
6OKK|1|g|G|31
6OKK|1|g|U|32
6OKK|1|g|C|33
6OKK|1|g|U|34
6OKK|1|g|C|35
6OKK|1|g|A|36
6OKK|1|g|U|37
6OKK|1|g|A|38
6OKK|1|g|A|39
6OKK|1|g|U|40

Current chains

Chain g

E-site tRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain I

40S ribosomal protein S5

Chain P

40S ribosomal protein S11

Chain e

40S ribosomal protein S28e