HL_6OKK_038

3D structure

PDB id

6OKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAGUUCGA

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OKK_038 not in the Motif Atlas

Homologous match to HL_3TUP_003

Geometric discrepancy: 0.2953

The information below is about HL_3TUP_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

6OKK|1|g|U|51
6OKK|1|g|G|52
6OKK|1|g|A|53
6OKK|1|g|G|54
6OKK|1|g|U|55
6OKK|1|g|U|56
6OKK|1|g|C|57
6OKK|1|g|G|58
6OKK|1|g|A|59

Current chains

Chain g

E-site tRNA

Nearby chains