HL_6OLG_005

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUCUGAUCG

Length

10 nucleotides

Bulged bases

6OLG|1|A2|U|206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_005 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.2174

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6OLG|1|A2|C|199
6OLG|1|A2|U|200
6OLG|1|A2|U|201
6OLG|1|A2|C|202
6OLG|1|A2|U|203
6OLG|1|A2|G|204
6OLG|1|A2|A|205
6OLG|1|A2|U|206
6OLG|1|A2|C|207
6OLG|1|A2|G|208

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

60S ribosomal protein L4

Chain AY

60S ribosomal protein L26

Chain Ae

60S ribosomal protein L32