HL_6OLG_008
3D structure
- PDB id
- 6OLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGUAAACUCC
- Length
- 10 nucleotides
- Bulged bases
- 6OLG|1|A2|G|309, 6OLG|1|A2|U|310
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OLG_008 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.1876
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6OLG|1|A2|G|308
6OLG|1|A2|G|309
6OLG|1|A2|U|310
6OLG|1|A2|A|311
6OLG|1|A2|A|312
6OLG|1|A2|A|313
6OLG|1|A2|C|314
6OLG|1|A2|U|315
6OLG|1|A2|C|316
6OLG|1|A2|C|317
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AL
- 60S ribosomal protein L13
- Chain AN
- 60S ribosomal protein L15
- Chain Aa
- 60S ribosomal protein L27a
- Chain Ai
- 60S ribosomal protein L36
- Chain Ao
- 60S ribosomal protein L36a
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