HL_6OLG_019

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGCGCUCG

Length

8 nucleotides

Bulged bases

6OLG|1|A2|G|1391, 6OLG|1|A2|U|1393

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_019 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3933

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6OLG|1|A2|C|1388
6OLG|1|A2|G|1389
6OLG|1|A2|C|1390
6OLG|1|A2|G|1391
6OLG|1|A2|C|1392
6OLG|1|A2|U|1393
6OLG|1|A2|C|1394
6OLG|1|A2|G|1395

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain Ab

60S ribosomal protein L29