HL_6OLG_020

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGCCUCUCCAGUCCGC

Length

16 nucleotides

Bulged bases

6OLG|1|A2|U|1421

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_020 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1905

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6OLG|1|A2|G|1417
6OLG|1|A2|G|1418
6OLG|1|A2|C|1419
6OLG|1|A2|C|1420
6OLG|1|A2|U|1421
6OLG|1|A2|C|1422
6OLG|1|A2|U|1423
6OLG|1|A2|C|1424
6OLG|1|A2|C|1425
6OLG|1|A2|A|1426
6OLG|1|A2|G|1427
6OLG|1|A2|U|1428
6OLG|1|A2|C|1429
6OLG|1|A2|C|1430
6OLG|1|A2|G|1431
6OLG|1|A2|C|1432

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

60S ribosomal protein L4

Chain AF

60S ribosomal protein L7

Chain AQ

60S ribosomal protein L18