HL_6OLG_026

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

6OLG|1|A2|G|1746, 6OLG|1|A2|C|1750

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_026 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.3309

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6OLG|1|A2|C|1745
6OLG|1|A2|G|1746
6OLG|1|A2|A|1747
6OLG|1|A2|A|1748
6OLG|1|A2|A|1749
6OLG|1|A2|C|1750
6OLG|1|A2|G|1751

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain BP

40S ribosomal protein S15

Chain BS

40S ribosomal protein S18