HL_6OLG_031

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGUAACAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_031 not in the Motif Atlas

Homologous match to HL_5TBW_028

Geometric discrepancy: 0.3876

The information below is about HL_5TBW_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6OLG|1|A2|G|1986
6OLG|1|A2|U|1987
6OLG|1|A2|G|1988
6OLG|1|A2|U|1989
6OLG|1|A2|A|1990
6OLG|1|A2|A|1991
6OLG|1|A2|C|1992
6OLG|1|A2|A|1993
6OLG|1|A2|A|1994
6OLG|1|A2|C|1995

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain Am

60S ribosomal protein L40

Chain Aq

60S ribosomal protein L12