HL_6OLG_038

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

6OLG|1|A2|U|2509, 6OLG|1|A2|C|2510

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_038 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.2257

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6OLG|1|A2|G|2502
6OLG|1|A2|U|2503
6OLG|1|A2|U|2504
6OLG|1|A2|C|2505
6OLG|1|A2|A|2506
6OLG|1|A2|G|2507
6OLG|1|A2|A|2508
6OLG|1|A2|U|2509
6OLG|1|A2|C|2510
6OLG|1|A2|C|2511

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AR

60S ribosomal protein L19

Chain AX

60S ribosomal protein L23a

Chain Ag

60S ribosomal protein L34