HL_6OLG_041

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

6OLG|1|A2|U|2610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_041 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.2149

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6OLG|1|A2|G|2603
6OLG|1|A2|U|2604
6OLG|1|A2|U|2605
6OLG|1|A2|C|2606
6OLG|1|A2|U|2607
6OLG|1|A2|C|2608
6OLG|1|A2|U|2609
6OLG|1|A2|U|2610
6OLG|1|A2|U|2611

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AR

60S ribosomal protein L19

Chain AU

60S ribosomal protein L22