HL_6OLG_055

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6OLG|1|A2|A|3847, 6OLG|1|A2|A|3848, 6OLG|1|A2|C|3849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_055 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.1466

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6OLG|1|A2|G|3844
6OLG|1|A2|G|3845
6OLG|1|A2|G|3846
6OLG|1|A2|A|3847
6OLG|1|A2|A|3848
6OLG|1|A2|C|3849
6OLG|1|A2|G|3850
6OLG|1|A2|G|3851
6OLG|1|A2|G|3852
6OLG|1|A2|C|3853

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AO

60S ribosomal protein L13a

Chain Ae

60S ribosomal protein L32