HL_6OLG_058

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6OLG|1|A2|G|4157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_058 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1194

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6OLG|1|A2|C|4155
6OLG|1|A2|U|4156
6OLG|1|A2|G|4157
6OLG|1|A2|G|4158
6OLG|1|A2|G|4159
6OLG|1|A2|G|4160
6OLG|1|A2|C|4161
6OLG|1|A2|G|4162
6OLG|1|A2|G|4163

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AI

60S ribosomal protein L10

Chain Ab

60S ribosomal protein L29

Chain Bv

Transfer RNA; tRNA