HL_6OLG_060

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_060 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1393

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6OLG|1|A2|G|4212
6OLG|1|A2|A|4213
6OLG|1|A2|C|4214
6OLG|1|A2|A|4215
6OLG|1|A2|G|4216
6OLG|1|A2|A|4217
6OLG|1|A2|A|4218
6OLG|1|A2|A|4219
6OLG|1|A2|C|4220

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AJ

60S ribosomal protein L11