HL_6OLG_071

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6OLG|1|A2|G|4656, 6OLG|1|A2|C|4660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_071 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0915

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6OLG|1|A2|C|4650
6OLG|1|A2|U|4651
6OLG|1|A2|G|4652
6OLG|1|A2|A|4653
6OLG|1|A2|A|4654
6OLG|1|A2|C|4655
6OLG|1|A2|G|4656
6OLG|1|A2|C|4657
6OLG|1|A2|C|4658
6OLG|1|A2|U|4659
6OLG|1|A2|C|4660
6OLG|1|A2|U|4661
6OLG|1|A2|A|4662
6OLG|1|A2|A|4663
6OLG|1|A2|G|4664

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L9

Chain AO

60S ribosomal protein L13a

Chain Am

60S ribosomal protein L40