HL_6OLG_072

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAAGGC

Length

8 nucleotides

Bulged bases

6OLG|1|A2|A|4868, 6OLG|1|A2|A|4869

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_072 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3054

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6OLG|1|A2|G|4865
6OLG|1|A2|G|4866
6OLG|1|A2|A|4867
6OLG|1|A2|A|4868
6OLG|1|A2|A|4869
6OLG|1|A2|G|4870
6OLG|1|A2|G|4871
6OLG|1|A2|C|4872

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AO

60S ribosomal protein L13a