HL_6OLG_078

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGUUCCUCCC

Length

11 nucleotides

Bulged bases

6OLG|1|A3|U|124, 6OLG|1|A3|C|128

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_078 not in the Motif Atlas

Geometric match to HL_5UD5_001

Geometric discrepancy: 0.3721

The information below is about HL_5UD5_001

Detailed Annotation

tRNA D-loop

Broad Annotation

tRNA D-loop

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

6OLG|1|A3|G|120
6OLG|1|A3|G|121
6OLG|1|A3|G|122
6OLG|1|A3|U|123
6OLG|1|A3|U|124
6OLG|1|A3|C|125
6OLG|1|A3|C|126
6OLG|1|A3|U|127
6OLG|1|A3|C|128
6OLG|1|A3|C|129
6OLG|1|A3|C|130

Current chains

Chain A3

5.8S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain AX

60S ribosomal protein L23a