HL_6OLG_084

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUCGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_084 not in the Motif Atlas

Geometric match to HL_5TBW_017

Geometric discrepancy: 0.1418

The information below is about HL_5TBW_017

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6OLG|1|B1|U|197
6OLG|1|B1|U|198
6OLG|1|B1|C|199
6OLG|1|B1|G|200
6OLG|1|B1|C|201
6OLG|1|B1|G|202

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BI

40S ribosomal protein S8