HL_6OLG_094

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_094 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1851

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6OLG|1|B1|A|569
6OLG|1|B1|C|570
6OLG|1|B1|U|571
6OLG|1|B1|U|572
6OLG|1|B1|U|573
6OLG|1|B1|A|574
6OLG|1|B1|A|575
6OLG|1|B1|A|576
6OLG|1|B1|U|577
6OLG|1|B1|C|578
6OLG|1|B1|C|579
6OLG|1|B1|U|580
6OLG|1|B1|U|581

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BJ

40S ribosomal protein S9

Chain BY

40S ribosomal protein S24