HL_6OLG_104

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAUUCCCAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_104 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.1719

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6OLG|1|B1|U|1112
6OLG|1|B1|A|1113
6OLG|1|B1|U|1114
6OLG|1|B1|U|1115
6OLG|1|B1|C|1116
6OLG|1|B1|C|1117
6OLG|1|B1|C|1118
6OLG|1|B1|A|1119
6OLG|1|B1|U|1120
6OLG|1|B1|G|1121

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BB

40S ribosomal protein S3a

Chain Bb

40S ribosomal protein S27