HL_6OLG_109

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_109 not in the Motif Atlas

Homologous match to HL_4V88_214

Geometric discrepancy: 0.22

The information below is about HL_4V88_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6OLG|1|B1|A|1353
6OLG|1|B1|G|1354
6OLG|1|B1|C|1355
6OLG|1|B1|G|1356
6OLG|1|B1|A|1357
6OLG|1|B1|U|1358

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BA

40S ribosomal protein SA

Chain BC

40S ribosomal protein S2