HL_6OLG_117

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

6OLG|1|Bv|C|17, 6OLG|1|Bv|G|18, 6OLG|1|Bv|G|19

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_117 not in the Motif Atlas

Homologous match to HL_4V9K_033

Geometric discrepancy: 0.1803

The information below is about HL_4V9K_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

6OLG|1|Bv|C|13
6OLG|1|Bv|A|14
6OLG|1|Bv|G|15
6OLG|1|Bv|U|16
6OLG|1|Bv|C|17
6OLG|1|Bv|G|18
6OLG|1|Bv|G|19
6OLG|1|Bv|U|20
6OLG|1|Bv|A|21
6OLG|1|Bv|G|22

Current chains

Chain Bv

tRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain AJ

60S ribosomal protein L11

Chain Ao

60S ribosomal protein L36a