HL_6OLG_119
3D structure
- PDB id
- 6OLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUUCGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OLG_119 not in the Motif Atlas
- Homologous match to HL_4LCK_003
- Geometric discrepancy: 0.1599
- The information below is about HL_4LCK_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
6OLG|1|Bv|G|53
6OLG|1|Bv|U|54
6OLG|1|Bv|U|55
6OLG|1|Bv|C|56
6OLG|1|Bv|G|57
6OLG|1|Bv|A|58
6OLG|1|Bv|U|59
6OLG|1|Bv|U|60
6OLG|1|Bv|C|61
Current chains
- Chain Bv
- tRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain AJ
- 60S ribosomal protein L11
- Chain Ao
- 60S ribosomal protein L36a
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