HL_6OLI_008

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGCCGGUACAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_008 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2151

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6OLI|1|S2|C|69
6OLI|1|S2|G|70
6OLI|1|S2|G|71
6OLI|1|S2|C|72
6OLI|1|S2|C|73
6OLI|1|S2|G|74
6OLI|1|S2|G|75
6OLI|1|S2|U|76
6OLI|1|S2|A|77
6OLI|1|S2|C|78
6OLI|1|S2|A|79
6OLI|1|S2|G|80

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SG

40S ribosomal protein S6