HL_6OLI_046

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUCUGAUCG

Length

10 nucleotides

Bulged bases

6OLI|1|t|U|206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_046 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2032

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6OLI|1|t|C|199
6OLI|1|t|U|200
6OLI|1|t|U|201
6OLI|1|t|C|202
6OLI|1|t|U|203
6OLI|1|t|G|204
6OLI|1|t|A|205
6OLI|1|t|U|206
6OLI|1|t|C|207
6OLI|1|t|G|208

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Z

60S ribosomal protein L26

Chain f

60S ribosomal protein L32