HL_6OLI_056

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

6OLI|1|t|U|1162

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_056 not in the Motif Atlas

Geometric match to HL_2Y8Y_001

Geometric discrepancy: 0.2297

The information below is about HL_2Y8Y_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6OLI|1|t|G|1161
6OLI|1|t|U|1162
6OLI|1|t|C|1163
6OLI|1|t|C|1164
6OLI|1|t|C|1165
6OLI|1|t|C|1166

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA

Chain F

60S ribosomal protein L5

Chain K

60S ribosomal protein L10