HL_6OLI_068

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

6OLI|1|t|G|1746, 6OLI|1|t|C|1750

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_068 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.4595

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6OLI|1|t|C|1745
6OLI|1|t|G|1746
6OLI|1|t|A|1747
6OLI|1|t|A|1748
6OLI|1|t|A|1749
6OLI|1|t|C|1750
6OLI|1|t|G|1751

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L11

Chain SP

40S ribosomal protein S15