HL_6OLI_072

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAUGGAAGUCGG

Length

13 nucleotides

Bulged bases

6OLI|1|t|G|1962, 6OLI|1|t|A|1965

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_072 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.3803

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6OLI|1|t|C|1958
6OLI|1|t|C|1959
6OLI|1|t|A|1960
6OLI|1|t|U|1961
6OLI|1|t|G|1962
6OLI|1|t|G|1963
6OLI|1|t|A|1964
6OLI|1|t|A|1965
6OLI|1|t|G|1966
6OLI|1|t|U|1967
6OLI|1|t|C|1968
6OLI|1|t|G|1969
6OLI|1|t|G|1970

Current chains

Chain t

28S ribosomal RNA

Nearby chains