HL_6OLI_073

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGUAACAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_073 not in the Motif Atlas

Homologous match to HL_5TBW_028

Geometric discrepancy: 0.5169

The information below is about HL_5TBW_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6OLI|1|t|G|1986
6OLI|1|t|U|1987
6OLI|1|t|G|1988
6OLI|1|t|U|1989
6OLI|1|t|A|1990
6OLI|1|t|A|1991
6OLI|1|t|C|1992
6OLI|1|t|A|1993
6OLI|1|t|A|1994
6OLI|1|t|C|1995

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain n

60S ribosomal protein L40